Resource
| Id | hg19/genomes/ucsc-hg19 |
|---|---|
| Type | genome |
| Version | 0 |
| Summary |
Nucleotide sequence of the GRCh37/hg19 genome assembly from UCSC
|
| Description |
Nucleotide sequence of the GRCh37/hg19 genome assembly from UCSC. This assembly is an earlier human reference genome release widely used in genetic and genomic studies, with UCSC-style chromosome names such as chr1, chr2, chrX, chrY, and chrM. Downloaded on 6/12/2026 https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz Processing Details:
|
| Labels |
Chromosomes (93):
| Chrom | Length | A | T | C | G | N |
|---|---|---|---|---|---|---|
| Global | 3,137,161,264 | 27.25% | 27.29% | 18.90% | 18.91% | 7.65% |
| chr1 | 249,250,621 | 26.31% | 26.35% | 18.87% | 18.86% | 9.62% |
| chr2 | 243,199,373 | 29.24% | 29.29% | 19.70% | 19.72% | 2.05% |
| chr3 | 198,022,430 | 29.65% | 29.67% | 19.52% | 19.53% | 1.63% |
| chr4 | 191,154,276 | 30.31% | 30.32% | 18.77% | 18.78% | 1.83% |
| chr5 | 180,915,260 | 29.67% | 29.74% | 19.40% | 19.42% | 1.78% |
| chr6 | 171,115,067 | 29.54% | 29.53% | 19.37% | 19.38% | 2.17% |
| chr7 | 159,138,663 | 28.90% | 28.94% | 19.90% | 19.88% | 2.38% |
| chrX | 155,270,560 | 29.40% | 29.48% | 19.20% | 19.23% | 2.69% |
| chr8 | 146,364,022 | 29.22% | 29.18% | 19.61% | 19.61% | 2.37% |
| chr9 | 141,213,431 | 24.97% | 24.96% | 17.58% | 17.57% | 14.92% |
| chr10 | 135,534,747 | 28.28% | 28.32% | 20.15% | 20.14% | 3.11% |
| chr11 | 135,006,516 | 28.37% | 28.38% | 20.17% | 20.20% | 2.87% |
| chr12 | 133,851,895 | 28.84% | 28.86% | 19.90% | 19.89% | 2.52% |
| chr13 | 115,169,878 | 25.47% | 25.55% | 15.99% | 15.99% | 17.00% |
| chr14 | 107,349,540 | 24.21% | 24.40% | 16.79% | 16.83% | 17.76% |
| chr15 | 102,531,392 | 23.04% | 23.02% | 16.82% | 16.80% | 20.32% |
| chr16 | 90,354,753 | 24.04% | 24.16% | 19.51% | 19.59% | 12.69% |
| chr17 | 81,195,210 | 26.06% | 26.12% | 21.83% | 21.80% | 4.19% |
| chr18 | 78,077,248 | 28.77% | 28.80% | 19.01% | 19.04% | 4.38% |
| chr20 | 63,025,520 | 26.22% | 26.54% | 20.80% | 20.86% | 5.59% |
| chrY | 59,373,566 | 12.91% | 13.03% | 8.59% | 8.68% | 56.79% |
| chr19 | 59,128,983 | 24.34% | 24.40% | 22.79% | 22.85% | 5.61% |
| chr22 | 51,304,566 | 17.73% | 17.65% | 16.33% | 16.31% | 31.99% |
| chr21 | 48,129,895 | 21.66% | 21.50% | 14.88% | 14.91% | 27.06% |
| chr6_ssto_hap7 | 4,928,567 | 23.78% | 23.46% | 18.63% | 18.81% | 15.32% |
| chr6_mcf_hap5 | 4,833,398 | 21.74% | 21.19% | 17.76% | 17.82% | 21.49% |
| chr6_cox_hap2 | 4,795,371 | 27.97% | 27.35% | 22.31% | 22.37% | 0.00% |
| chr6_mann_hap4 | 4,683,263 | 24.69% | 24.22% | 19.28% | 19.38% | 12.44% |
| chr6_apd_hap1 | 4,622,290 | 14.29% | 13.86% | 11.02% | 11.04% | 49.79% |
| chr6_qbl_hap6 | 4,611,984 | 25.80% | 25.34% | 20.97% | 21.03% | 6.87% |
| chr6_dbb_hap3 | 4,610,396 | 25.43% | 24.79% | 20.47% | 20.50% | 8.81% |
| chr17_ctg5_hap1 | 1,680,828 | 25.54% | 25.76% | 21.17% | 21.58% | 5.95% |
| chr4_ctg9_hap1 | 590,426 | 31.36% | 32.26% | 18.22% | 18.16% | 0.00% |
| chr1_gl000192_random | 547,496 | 29.79% | 28.72% | 20.59% | 20.90% | 0.00% |
| chrUn_gl000225 | 211,173 | 26.97% | 25.38% | 23.17% | 24.48% | 0.00% |
| chr4_gl000194_random | 191,469 | 27.65% | 29.09% | 21.69% | 21.57% | 0.00% |
| chr4_gl000193_random | 189,789 | 28.19% | 29.01% | 21.40% | 21.40% | 0.00% |
| chr9_gl000200_random | 187,035 | 29.59% | 30.46% | 19.89% | 20.06% | 0.00% |
| chrUn_gl000222 | 186,861 | 27.58% | 28.45% | 21.87% | 22.10% | 0.00% |
| chrUn_gl000212 | 186,858 | 28.22% | 27.40% | 22.72% | 21.66% | 0.00% |
| chr7_gl000195_random | 182,896 | 29.23% | 30.10% | 20.24% | 20.42% | 0.00% |
| chrUn_gl000223 | 180,455 | 29.33% | 27.47% | 21.53% | 21.67% | 0.00% |
| chrUn_gl000224 | 179,693 | 27.96% | 28.75% | 20.83% | 22.46% | 0.00% |
| chrUn_gl000219 | 179,198 | 30.43% | 29.61% | 19.81% | 20.15% | 0.00% |
| chr17_gl000205_random | 174,588 | 28.21% | 30.05% | 21.03% | 20.70% | 0.00% |
| chrUn_gl000215 | 172,545 | 29.17% | 28.83% | 21.01% | 20.99% | 0.00% |
| chrUn_gl000216 | 172,294 | 24.03% | 33.99% | 27.11% | 14.86% | 0.00% |
| chrUn_gl000217 | 172,149 | 30.17% | 32.24% | 18.92% | 18.66% | 0.00% |
| chr9_gl000199_random | 169,874 | 32.20% | 29.88% | 20.59% | 17.32% | 0.00% |
| chrUn_gl000211 | 166,566 | 30.57% | 30.72% | 19.19% | 19.52% | 0.00% |
| chrUn_gl000213 | 164,239 | 29.25% | 29.84% | 20.60% | 20.30% | 0.00% |
| chrUn_gl000220 | 161,802 | 23.01% | 28.53% | 25.17% | 23.30% | 0.00% |
| chrUn_gl000218 | 161,147 | 28.56% | 29.82% | 20.66% | 20.96% | 0.00% |
| chr19_gl000209_random | 159,169 | 27.63% | 25.87% | 22.27% | 24.23% | 0.00% |
| chrUn_gl000221 | 155,397 | 30.83% | 30.53% | 19.23% | 19.40% | 0.00% |
| chrUn_gl000214 | 137,718 | 29.51% | 28.97% | 19.96% | 21.56% | 0.00% |
| chrUn_gl000228 | 129,120 | 23.63% | 22.43% | 27.49% | 26.45% | 0.00% |
| chrUn_gl000227 | 128,374 | 32.00% | 26.99% | 20.45% | 20.56% | 0.00% |
| chr1_gl000191_random | 106,433 | 26.28% | 29.37% | 22.35% | 22.00% | 0.00% |
| chr19_gl000208_random | 92,689 | 31.48% | 30.86% | 19.82% | 17.84% | 0.00% |
| chr9_gl000198_random | 90,085 | 30.91% | 31.24% | 17.34% | 20.52% | 0.00% |
| chr17_gl000204_random | 81,310 | 24.23% | 21.30% | 27.92% | 26.55% | 0.00% |
| chrUn_gl000233 | 45,941 | 26.54% | 31.04% | 20.69% | 21.73% | 0.00% |
| chrUn_gl000237 | 45,867 | 26.76% | 26.58% | 22.33% | 24.34% | 0.00% |
| chrUn_gl000230 | 43,691 | 29.02% | 29.27% | 21.37% | 20.34% | 0.00% |
| chrUn_gl000242 | 43,523 | 24.33% | 27.27% | 23.05% | 25.34% | 0.00% |
| chrUn_gl000243 | 43,341 | 24.75% | 29.24% | 23.77% | 22.23% | 0.00% |
| chrUn_gl000241 | 42,152 | 32.31% | 30.40% | 18.66% | 18.63% | 0.00% |
| chrUn_gl000236 | 41,934 | 31.02% | 27.35% | 20.11% | 21.52% | 0.00% |
| chrUn_gl000240 | 41,933 | 32.44% | 25.02% | 21.37% | 21.18% | 0.00% |
| chr17_gl000206_random | 41,001 | 21.39% | 25.52% | 25.57% | 27.52% | 0.00% |
| chrUn_gl000232 | 40,652 | 28.37% | 29.80% | 20.88% | 20.94% | 0.00% |
| chrUn_gl000234 | 40,531 | 26.64% | 30.29% | 21.53% | 21.54% | 0.00% |
| chr11_gl000202_random | 40,103 | 23.01% | 22.39% | 28.06% | 26.54% | 0.00% |
| chrUn_gl000238 | 39,939 | 26.05% | 33.95% | 19.54% | 20.46% | 0.00% |
| chrUn_gl000244 | 39,929 | 27.42% | 28.95% | 21.45% | 22.18% | 0.00% |
| chrUn_gl000248 | 39,786 | 25.42% | 28.92% | 23.29% | 22.37% | 0.00% |
| chr8_gl000196_random | 38,914 | 35.57% | 24.78% | 20.33% | 19.32% | 0.00% |
| chrUn_gl000249 | 38,502 | 28.03% | 25.19% | 23.32% | 23.46% | 0.00% |
| chrUn_gl000246 | 38,154 | 27.36% | 33.99% | 19.27% | 19.37% | 0.00% |
| chr17_gl000203_random | 37,498 | 33.51% | 33.21% | 16.20% | 17.09% | 0.00% |
| chr8_gl000197_random | 37,175 | 23.25% | 22.62% | 26.59% | 27.28% | 0.27% |
| chrUn_gl000245 | 36,651 | 35.13% | 28.56% | 18.30% | 18.01% | 0.00% |
| chrUn_gl000247 | 36,422 | 30.21% | 26.19% | 21.40% | 22.20% | 0.00% |
| chr9_gl000201_random | 36,148 | 19.64% | 20.91% | 28.70% | 30.75% | 0.00% |
| chrUn_gl000235 | 34,474 | 34.36% | 27.64% | 19.10% | 18.90% | 0.00% |
| chrUn_gl000239 | 33,824 | 27.26% | 27.34% | 21.49% | 23.91% | 0.00% |
| chr21_gl000210_random | 27,682 | 22.72% | 22.82% | 27.91% | 26.19% | 0.36% |
| chrUn_gl000231 | 27,386 | 25.93% | 29.41% | 22.65% | 22.01% | 0.00% |
| chrUn_gl000229 | 19,913 | 20.00% | 29.85% | 27.04% | 23.11% | 0.00% |
| chrM | 16,571 | 30.86% | 24.66% | 31.33% | 13.16% | 0.00% |
| chrUn_gl000226 | 15,008 | 30.00% | 30.98% | 17.50% | 21.53% | 0.00% |
| chr18_gl000207_random | 4,262 | 23.56% | 32.50% | 13.80% | 30.15% | 0.00% |
Bi-Nucleotide distribution:
| A | T | C | G | N | |
|---|---|---|---|---|---|
| A | 9.02% | 7.12% | 4.65% | 6.46% | 0.00% |
| T | 6.05% | 9.04% | 5.48% | 6.71% | 0.00% |
| C | 6.70% | 6.46% | 4.82% | 0.91% | 0.00% |
| G | 5.48% | 4.66% | 3.94% | 4.83% | 0.00% |
| N | 0.00% | 0.00% | 0.00% | 0.00% | 7.65% |
Files
| Filename | Size | md5 |
|---|---|---|
| build.sh | 83.0 B | a7fdf66c21b1b22df9293c7a744dc65d |
| genomic_resource.yaml | 965.0 B | 76a55b2da7ead1459ec2727b55420da9 |
| hg19.fa.bgz | 907.73 MB | afbf89c46adb305f68d9e09e941d0140 |
| hg19.fa.bgz.dvc | 96.0 B | 3af8a7d226566b361b6c4258b7e1b32f |
| hg19.fa.bgz.fai | 3.46 KB | e700bec606168273af0920bd1dd49eb9 |
| hg19.fa.bgz.gzi | 765.91 KB | fc5668ae390d2bea396e806e9b7d7e1e |
| statistics/ |