| Id: | t2t/genomes/t2t-chm13v2.0 |
| Type: | genome |
| Version: | 0 |
| Summary: |
Nucleotide sequence of the T2T-CHM13v2.0 genome assembly |
| Description: |
Nucleotide sequence of the T2T-CHM13v2.0 genome assembly, providing gapless reference chromosomes from telomere to telomere, including complete centromeres and rDNA arrays, based on a female (46,XX) haploid-derived cell line and therefore lacking the Y chromosome. Downloaded on 9/19/2025 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/GCA_009914755.4.fa.gz https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/GCA_009914755.4.chromAlias.txt Processing Details: build.sh unzips the original file, replaces chromosome names with ucsc naming (e.g. chr1), rearranges chromosomes by conventional order (chr1, chr2,...) and creates an index file using 'samtools faidx'. |
| Labels: |
chrom prefix: chr
| Chrom | Length | A | T | C | G | N |
|---|---|---|---|---|---|---|
| Global | 3,117,292,070 | 29.64% | 29.61% | 20.33% | 20.43% | 0.00% |
| chr1 | 248,387,328 | 29.63% | 28.87% | 20.54% | 20.96% | 0.00% |
| chr2 | 242,696,752 | 29.84% | 29.92% | 20.08% | 20.15% | 0.00% |
| chr3 | 201,105,948 | 30.40% | 30.16% | 19.76% | 19.68% | 0.00% |
| chr4 | 193,574,945 | 30.84% | 31.03% | 19.01% | 19.12% | 0.00% |
| chr5 | 182,045,439 | 30.15% | 30.33% | 19.76% | 19.76% | 0.00% |
| chr6 | 172,126,628 | 30.17% | 30.22% | 19.77% | 19.84% | 0.00% |
| chr7 | 160,567,428 | 29.57% | 29.71% | 20.35% | 20.36% | 0.00% |
| chr8 | 146,259,331 | 29.89% | 29.88% | 20.09% | 20.15% | 0.00% |
| chr9 | 150,617,247 | 29.33% | 29.33% | 20.62% | 20.72% | 0.00% |
| chr10 | 134,758,134 | 29.20% | 29.26% | 20.71% | 20.82% | 0.00% |
| chr11 | 135,127,769 | 29.19% | 29.25% | 20.74% | 20.81% | 0.00% |
| chr12 | 133,324,548 | 29.65% | 29.58% | 20.43% | 20.34% | 0.00% |
| chr13 | 113,566,686 | 30.96% | 30.72% | 19.52% | 18.80% | 0.00% |
| chr14 | 101,161,492 | 29.37% | 29.56% | 20.51% | 20.55% | 0.00% |
| chr15 | 99,753,195 | 28.07% | 29.81% | 22.13% | 19.99% | 0.00% |
| chr16 | 96,330,374 | 27.13% | 29.34% | 22.17% | 21.36% | 0.00% |
| chr17 | 84,276,897 | 27.30% | 27.41% | 22.57% | 22.72% | 0.00% |
| chr18 | 80,542,538 | 30.02% | 30.18% | 19.73% | 20.07% | 0.00% |
| chr19 | 61,707,364 | 25.98% | 26.36% | 23.68% | 23.98% | 0.00% |
| chr20 | 66,210,255 | 28.13% | 28.15% | 21.58% | 22.13% | 0.00% |
| chr21 | 45,090,682 | 29.12% | 29.24% | 20.97% | 20.68% | 0.00% |
| chr22 | 51,324,926 | 27.19% | 26.96% | 22.89% | 22.96% | 0.00% |
| chrX | 154,259,566 | 30.22% | 30.27% | 19.77% | 19.74% | 0.00% |
| chrY | 62,460,029 | 35.15% | 28.70% | 14.73% | 21.41% | 0.00% |
| chrM | 16,569 | 30.93% | 24.70% | 31.28% | 13.09% | 0.00% |
| A | T | C | G | N | |
|---|---|---|---|---|---|
| A | 9.81% | 8.04% | 4.97% | 6.82% | 0.00% |
| T | 6.49% | 9.76% | 6.06% | 7.30% | 0.00% |
| C | 7.25% | 6.84% | 5.16% | 1.09% | 0.00% |
| G | 6.10% | 4.98% | 4.13% | 5.22% | 0.00% |
| N | 0.00% | 0.00% | 0.00% | 0.00% | 0.00% |
| Filename | Size | md5 |
|---|---|---|
| FASTAprep.py | 2.09 KB | 4092eca3ffb2a1ed6450d964c6f8c889 |
| GCA_009914755.4.chromAlias.txt | 866.0 B | 3c7f3f0529a46d9da6fee6aee70a1fed |
| GCA_009914755.4.fa.gz | 929.83 MB | a7b97e4250ec3b5ade429d641e915e72 |
| GCA_009914755.4.fa.gz.dvc | 106.0 B | f43f53f15a092f2d46821cd57d604001 |
| GCA_009914755.4.ordered.fa | 2.95 GB | 7464792af0b8db783fc57626cc614785 |
| GCA_009914755.4.ordered.fa.dvc | 112.0 B | 9a9c27d7f0cb54e6382f07d4052b8eb8 |
| GCA_009914755.4.ordered.fa.fai | 787.0 B | 8a3d18288b69b31bedb27f10cb49bf23 |
| build.sh | 140.0 B | 9908861e6a5a5df1eaa8d706bb2d821c |
| genomic_resource.yaml | 1.11 KB | 08435f3c20c2e04d0bbacce60b088e04 |
| statistics/ |