Resource
| Id | hg38/variant_frequencies/gnomAD_v2.1.1_liftover/genomes |
|---|---|
| Type | allele_score |
| Version | 0 |
| Summary |
Liftover of gnomAD genomes v2.1.1 to hg38.
|
| Description |
gnomAD genomes v2.1.1 liftoverOriginal gnomAD genomes v2.1.1 liftover is downloaded on October 19, 2020 from https://gnomad.broadinstitute.org/. tabix -s 1 -b 2 -e 2 -f gnomad..r2.1.1.extract.tsv.gz |
| Labels |
|
Scores (13)
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ID | str |
- |
gnomAD v2.1.1 liftover genomes variant ID
|
No histogram: Too many unique values 101 for categorical histogram. |
NO DOMAIN |
| AC | int |
genome_gnomad_v2_1_1_ac |
Alternative allele count in the whole gnomAD genome samples v2.1.1
|
 |
[0, 3.14e+04] |
| AN | int |
genome_gnomad_v2_1_1_an |
Total allele count in the whole gnomAD genome samples v2.1.1
|
 |
[0, 3.14e+04] |
| AF | float |
genome_gnomad_v2_1_1_af |
Alternative allele frequency in the whole gnomAD genome samples v2.1.1
|
 |
[0, 1] |
| AF_percent | float |
genome_gnomad_v2_1_1_af_percent |
Alternative allele frequency in the whole gnomAD genome samples v2.1.1 as %
|
 |
[0, 100] |
| controls_AC | int |
genome_gnomad_v2_1_1_controls_ac |
Alternative allele count in the controls subset of whole gnomAD genome samples v2.1.1
|
 |
[0, 1.09e+04] |
| controls_AN | int |
genome_gnomad_v2_1_1_controls_an |
gnomAD v2.1.1 liftover genome count of genotyped individuals in control group
|
 |
[0, 1.09e+04] |
| controls_AF | float |
- |
Alternative allele frequency in the controls subset of whole gnomAD genome samples v2.1.1
|
 |
[0, 1] |
| controls_AF_percent | float |
genome_gnomad_v2_1_1_controls_af_percent |
Alternative allele frequency in the controls subset of whole gnomAD genome samples v2.1.1 as %
|
 |
[0, 100] |
| non_neuro_AC | int |
genome_gnomad_v2_1_1_non_neuro_ac |
Alternative allele count in the non-neuro subset of whole gnomAD genome samples v2.1.1
|
 |
[0, 2.13e+04] |
| non_neuro_AN | int |
genome_gnomad_v2_1_1_non_neuro_an |
Total allele count in the non-neuro subset of whole gnomAD genome samples v2.1.1
|
 |
[0, 2.13e+04] |
| non_neuro_AF | float |
- |
Alternative allele frequency in the non-neuro subset of whole gnomAD genome samples v2.1.1
|
 |
[0, 1] |
| non_neuro_AF_percent | float |
genome_gnomad_v2_1_1_non_neuro_af_percent |
Alternative allele frequency in the non-neuro subset of whole gnomAD genome samples v2.1.1 as %
|
 |
[0, 100] |
Alleles
not computed
Files
| Filename | Size | md5 |
|---|---|---|
| combine_result.sh | 474.0 B | fa851daf7398367cb2d9f5a1a5b4a503 |
| extract_info.sh | 424.0 B | cf68020206b293f498e582ad7fc47086 |
| genomic_resource.yaml | 5.06 KB | d9e7d38adae1ba2d42fe580a88d02386 |
| gnomad.genomes.r2.1.1.extract.tsv.gz | 11.52 GB | ca9bac763bd3b6ad7f7b6410ac2846c2 |
| gnomad.genomes.r2.1.1.extract.tsv.gz.tbi | 2.56 MB | c50b22d0e97b437426e3990ab2bb2dad |
| hists/genome_gnomad_v2_1_1_af_percent | 2.8 KB | 1d048123f42ccf1a078863373184cdd0 |
| hists/genome_gnomad_v2_1_1_af_percent.hist.toml | 163.0 B | c11fd0ed93eea3cf4d3c411d8ec991d4 |
| statistics/ |