Resource
| Id | hg38/gene_models/ensGene_v20200110 |
|---|---|
| Type | gene_models |
| Version | 0 |
| Summary |
Ensembl Genes v20200110
|
| Description |
The Ensembl Genes gene model set provides transcript and gene annotations produced by the Ensembl project and made available through the UCSC Genome Browser as the ensGene track. Ensembl annotations include protein-coding and noncoding gene models with stable Ensembl gene and transcript identifiers, supporting cross-dataset comparisons and functional interpretation of genomic variants, positions, and regions. Yates et al, Ensembl 2026, Nucleic Acids Research 2026 Nassar et al, The UCSC Genome Browser database: 2025 update, Nucleic Acids Research 2025 Downloaded on: 05/21/2026 https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.ensGene.gtf.gz |
| Labels |
|
Configuration
Gene models file: hg38.ensGene.txt.gz
Format: default
Statistics
Chromosome statistics
| Transcript number | Protein coding transcript number | Gene number | Protein coding gene number | |
|---|---|---|---|---|
| Global | 208,239 | 98,344 | 64,252 | 22,372 |
| chr1 | 17,022 | 7,672 | 5,348 | 2,052 |
| chr10 | 6,442 | 2,804 | 2,294 | 738 |
| chr10_GL383545v1_alt | 8 | 2 | 7 | 1 |
| chr10_GL383546v1_alt | 21 | 8 | 9 | 3 |
| chr10_KI270825v1_alt | 3 | 1 | 3 | 1 |
| chr11 | 12,201 | 6,228 | 3,358 | 1,314 |
| chr11_JH159136v1_alt | 10 | 8 | 10 | 8 |
| chr11_JH159137v1_alt | 6 | 4 | 6 | 4 |
| chr11_KI270721v1_random | 5 | 1 | 5 | 1 |
| chr11_KI270829v1_alt | 6 | 5 | 6 | 5 |
| chr11_KI270830v1_alt | 7 | 7 | 7 | 7 |
| chr11_KI270831v1_alt | 15 | 12 | 10 | 7 |
| chr11_KI270832v1_alt | 22 | 21 | 11 | 10 |
| chr11_KI270902v1_alt | 3 | 1 | 3 | 1 |
| chr11_KI270903v1_alt | 7 | 7 | 5 | 5 |
| chr11_KI270927v1_alt | 5 | 3 | 5 | 3 |
| chr12 | 11,437 | 5,690 | 3,035 | 1,030 |
| chr12_GL383550v2_alt | 12 | 2 | 6 | 1 |
| chr12_GL383551v1_alt | 3 | 0 | 3 | 0 |
| chr12_GL383552v1_alt | 3 | 0 | 3 | 0 |
| chr12_GL383553v2_alt | 6 | 4 | 4 | 2 |
| chr12_GL877875v1_alt | 16 | 3 | 10 | 1 |
| chr12_GL877876v1_alt | 55 | 23 | 26 | 15 |
| chr12_KI270833v1_alt | 1 | 1 | 1 | 1 |
| chr12_KI270834v1_alt | 1 | 1 | 1 | 1 |
| chr12_KI270835v1_alt | 2 | 2 | 2 | 2 |
| chr12_KI270837v1_alt | 3 | 3 | 1 | 1 |
| chr12_KI270904v1_alt | 23 | 22 | 18 | 17 |
| chr13 | 3,166 | 1,097 | 1,360 | 317 |
| chr13_KI270838v1_alt | 1 | 1 | 1 | 1 |
| chr13_KI270840v1_alt | 3 | 1 | 3 | 1 |
| chr14 | 7,489 | 3,665 | 2,283 | 766 |
| chr14_GL000009v2_random | 5 | 1 | 5 | 1 |
| chr14_GL000194v1_random | 4 | 2 | 4 | 2 |
| chr14_GL000225v1_random | 8 | 0 | 8 | 0 |
| chr14_KI270722v1_random | 4 | 0 | 4 | 0 |
| chr14_KI270723v1_random | 2 | 0 | 2 | 0 |
| chr14_KI270724v1_random | 2 | 0 | 2 | 0 |
| chr14_KI270726v1_random | 2 | 2 | 2 | 2 |
| chr14_KI270844v1_alt | 5 | 4 | 4 | 3 |
| chr14_KI270845v1_alt | 5 | 5 | 3 | 3 |
| chr14_KI270846v1_alt | 54 | 34 | 40 | 20 |
| chr14_KI270847v1_alt | 44 | 40 | 26 | 22 |
| chr15 | 7,303 | 3,207 | 2,217 | 607 |
| chr15_GL383554v1_alt | 32 | 6 | 19 | 5 |
| chr15_GL383555v2_alt | 15 | 3 | 3 | 1 |
| chr15_KI270727v1_random | 12 | 5 | 11 | 4 |
| chr15_KI270848v1_alt | 6 | 3 | 6 | 3 |
| chr15_KI270849v1_alt | 7 | 4 | 5 | 2 |
| chr15_KI270850v1_alt | 14 | 11 | 11 | 8 |
| chr15_KI270851v1_alt | 6 | 2 | 6 | 2 |
| chr15_KI270852v1_alt | 12 | 5 | 11 | 4 |
| chr15_KI270905v1_alt | 70 | 35 | 57 | 22 |
| chr15_KI270906v1_alt | 5 | 2 | 5 | 2 |
| chr16 | 9,871 | 4,848 | 2,588 | 863 |
| chr16_GL383556v1_alt | 18 | 13 | 2 | 2 |
| chr16_GL383557v1_alt | 9 | 3 | 4 | 2 |
| chr16_KI270728v1_random | 10 | 8 | 8 | 6 |
| chr16_KI270853v1_alt | 80 | 50 | 53 | 23 |
| chr16_KI270854v1_alt | 4 | 3 | 3 | 2 |
| chr16_KI270855v1_alt | 18 | 18 | 7 | 7 |
| chr16_KI270856v1_alt | 1 | 1 | 1 | 1 |
| chr17 | 12,557 | 6,380 | 3,084 | 1,179 |
| chr17_GL000205v2_random | 8 | 1 | 8 | 1 |
| chr17_GL000258v2_alt | 37 | 28 | 22 | 13 |
| chr17_GL383563v3_alt | 8 | 6 | 6 | 4 |
| chr17_GL383564v2_alt | 13 | 8 | 12 | 8 |
| chr17_JH159146v1_alt | 44 | 34 | 26 | 22 |
| chr17_JH159147v1_alt | 12 | 10 | 8 | 6 |
| chr17_JH159148v1_alt | 12 | 9 | 9 | 6 |
| chr17_KI270857v1_alt | 101 | 86 | 64 | 49 |
| chr17_KI270858v1_alt | 1 | 1 | 1 | 1 |
| chr17_KI270860v1_alt | 3 | 3 | 3 | 3 |
| chr17_KI270861v1_alt | 18 | 16 | 9 | 7 |
| chr17_KI270862v1_alt | 10 | 7 | 6 | 3 |
| chr17_KI270907v1_alt | 1 | 1 | 1 | 1 |
| chr17_KI270908v1_alt | 36 | 29 | 18 | 11 |
| chr17_KI270909v1_alt | 16 | 15 | 9 | 8 |
| chr17_KI270910v1_alt | 7 | 4 | 5 | 2 |
| chr18 | 3,634 | 1,621 | 1,209 | 272 |
| chr18_GL383567v1_alt | 6 | 2 | 3 | 1 |
| chr18_GL383569v1_alt | 1 | 0 | 1 | 0 |
| chr18_GL383571v1_alt | 3 | 1 | 3 | 1 |
| chr18_GL383572v1_alt | 10 | 5 | 3 | 2 |
| chr18_KI270911v1_alt | 2 | 2 | 1 | 1 |
| chr18_KI270912v1_alt | 1 | 0 | 1 | 0 |
| chr19 | 12,746 | 7,233 | 3,004 | 1,458 |
| chr19_GL000209v2_alt | 18 | 14 | 13 | 10 |
| chr19_GL383573v1_alt | 27 | 17 | 12 | 3 |
| chr19_GL383574v1_alt | 14 | 9 | 3 | 2 |
| chr19_GL383575v2_alt | 19 | 8 | 10 | 2 |
| chr19_GL383576v1_alt | 12 | 3 | 11 | 2 |
| chr19_GL949746v1_alt | 235 | 125 | 54 | 36 |
| chr19_GL949747v2_alt | 115 | 84 | 32 | 29 |
| chr19_GL949748v2_alt | 50 | 48 | 23 | 21 |
| chr19_GL949749v2_alt | 52 | 51 | 21 | 21 |
| chr19_GL949750v2_alt | 44 | 43 | 20 | 19 |
| chr19_GL949751v2_alt | 55 | 50 | 24 | 21 |
| chr19_GL949752v1_alt | 272 | 146 | 58 | 40 |
| chr19_GL949753v2_alt | 160 | 94 | 43 | 29 |
| chr19_KI270865v1_alt | 2 | 2 | 1 | 1 |
| chr19_KI270867v1_alt | 5 | 5 | 4 | 4 |
| chr19_KI270868v1_alt | 5 | 5 | 4 | 4 |
| chr19_KI270882v1_alt | 29 | 20 | 19 | 12 |
| chr19_KI270883v1_alt | 23 | 14 | 13 | 7 |
| chr19_KI270884v1_alt | 26 | 18 | 13 | 7 |
| chr19_KI270885v1_alt | 25 | 15 | 14 | 7 |
| chr19_KI270886v1_alt | 16 | 12 | 12 | 8 |
| chr19_KI270887v1_alt | 19 | 13 | 14 | 9 |
| chr19_KI270888v1_alt | 15 | 12 | 10 | 8 |
| chr19_KI270889v1_alt | 15 | 11 | 11 | 7 |
| chr19_KI270890v1_alt | 20 | 14 | 15 | 10 |
| chr19_KI270891v1_alt | 19 | 11 | 14 | 7 |
| chr19_KI270914v1_alt | 23 | 17 | 14 | 9 |
| chr19_KI270915v1_alt | 19 | 11 | 14 | 7 |
| chr19_KI270916v1_alt | 20 | 13 | 14 | 9 |
| chr19_KI270917v1_alt | 37 | 30 | 12 | 9 |
| chr19_KI270918v1_alt | 17 | 10 | 11 | 5 |
| chr19_KI270919v1_alt | 23 | 14 | 14 | 6 |
| chr19_KI270920v1_alt | 34 | 27 | 12 | 9 |
| chr19_KI270921v1_alt | 42 | 32 | 18 | 14 |
| chr19_KI270922v1_alt | 34 | 25 | 12 | 9 |
| chr19_KI270923v1_alt | 35 | 27 | 12 | 10 |
| chr19_KI270929v1_alt | 36 | 28 | 12 | 9 |
| chr19_KI270930v1_alt | 24 | 16 | 16 | 9 |
| chr19_KI270931v1_alt | 20 | 12 | 14 | 7 |
| chr19_KI270932v1_alt | 24 | 16 | 16 | 10 |
| chr19_KI270933v1_alt | 27 | 17 | 14 | 7 |
| chr19_KI270938v1_alt | 376 | 240 | 84 | 43 |
| chr1_GL383518v1_alt | 36 | 13 | 14 | 4 |
| chr1_GL383519v1_alt | 54 | 19 | 11 | 6 |
| chr1_GL383520v2_alt | 21 | 14 | 5 | 2 |
| chr1_KI270706v1_random | 1 | 0 | 1 | 0 |
| chr1_KI270707v1_random | 2 | 0 | 2 | 0 |
| chr1_KI270708v1_random | 9 | 0 | 9 | 0 |
| chr1_KI270711v1_random | 4 | 4 | 1 | 1 |
| chr1_KI270713v1_random | 4 | 2 | 4 | 2 |
| chr1_KI270714v1_random | 1 | 0 | 1 | 0 |
| chr1_KI270759v1_alt | 2 | 1 | 2 | 1 |
| chr1_KI270761v1_alt | 6 | 6 | 6 | 6 |
| chr1_KI270762v1_alt | 10 | 10 | 7 | 7 |
| chr1_KI270763v1_alt | 8 | 6 | 5 | 3 |
| chr1_KI270765v1_alt | 5 | 1 | 5 | 1 |
| chr1_KI270766v1_alt | 16 | 15 | 10 | 9 |
| chr1_KI270892v1_alt | 6 | 6 | 6 | 6 |
| chr2 | 13,843 | 6,018 | 4,104 | 1,288 |
| chr20 | 4,167 | 1,974 | 1,443 | 543 |
| chr20_GL383577v2_alt | 5 | 0 | 4 | 0 |
| chr20_KI270869v1_alt | 1 | 0 | 1 | 0 |
| chr20_KI270870v1_alt | 8 | 8 | 4 | 4 |
| chr21 | 2,404 | 917 | 870 | 233 |
| chr21_GL383579v2_alt | 5 | 0 | 5 | 0 |
| chr21_GL383580v2_alt | 18 | 11 | 4 | 3 |
| chr21_GL383581v2_alt | 30 | 19 | 6 | 4 |
| chr21_KI270872v1_alt | 2 | 2 | 1 | 1 |
| chr22 | 4,495 | 2,074 | 1,379 | 490 |
| chr22_GL383582v2_alt | 23 | 13 | 8 | 4 |
| chr22_GL383583v2_alt | 7 | 2 | 4 | 1 |
| chr22_KB663609v1_alt | 8 | 6 | 6 | 4 |
| chr22_KI270731v1_random | 2 | 1 | 2 | 1 |
| chr22_KI270733v1_random | 18 | 0 | 18 | 0 |
| chr22_KI270734v1_random | 5 | 4 | 4 | 3 |
| chr22_KI270875v1_alt | 8 | 8 | 7 | 7 |
| chr22_KI270876v1_alt | 3 | 3 | 2 | 2 |
| chr22_KI270877v1_alt | 2 | 2 | 2 | 2 |
| chr22_KI270878v1_alt | 1 | 1 | 1 | 1 |
| chr22_KI270879v1_alt | 24 | 22 | 18 | 16 |
| chr22_KI270928v1_alt | 11 | 10 | 7 | 6 |
| chr2_GL383521v1_alt | 5 | 2 | 3 | 1 |
| chr2_GL383522v1_alt | 24 | 16 | 4 | 4 |
| chr2_GL582966v2_alt | 5 | 1 | 1 | 1 |
| chr2_KI270768v1_alt | 2 | 2 | 2 | 2 |
| chr2_KI270769v1_alt | 1 | 1 | 1 | 1 |
| chr2_KI270774v1_alt | 1 | 1 | 1 | 1 |
| chr2_KI270776v1_alt | 6 | 6 | 4 | 4 |
| chr2_KI270894v1_alt | 1 | 1 | 1 | 1 |
| chr3 | 11,630 | 5,499 | 3,129 | 1,070 |
| chr3_GL383526v1_alt | 6 | 2 | 4 | 1 |
| chr3_JH636055v2_alt | 15 | 7 | 7 | 1 |
| chr3_KI270777v1_alt | 2 | 2 | 1 | 1 |
| chr3_KI270779v1_alt | 6 | 4 | 4 | 2 |
| chr3_KI270780v1_alt | 3 | 0 | 3 | 0 |
| chr3_KI270782v1_alt | 3 | 2 | 2 | 1 |
| chr3_KI270784v1_alt | 3 | 1 | 3 | 1 |
| chr3_KI270895v1_alt | 6 | 4 | 4 | 2 |
| chr3_KI270924v1_alt | 6 | 4 | 5 | 3 |
| chr3_KI270934v1_alt | 6 | 4 | 4 | 2 |
| chr3_KI270935v1_alt | 8 | 6 | 5 | 3 |
| chr3_KI270936v1_alt | 5 | 3 | 3 | 1 |
| chr3_KI270937v1_alt | 6 | 4 | 4 | 2 |
| chr4 | 7,820 | 3,519 | 2,617 | 753 |
| chr4_GL000008v2_random | 5 | 0 | 5 | 0 |
| chr4_GL000257v2_alt | 7 | 7 | 6 | 6 |
| chr4_GL383527v1_alt | 10 | 5 | 3 | 3 |
| chr4_GL383528v1_alt | 3 | 0 | 1 | 0 |
| chr4_KI270786v1_alt | 2 | 0 | 2 | 0 |
| chr4_KI270789v1_alt | 1 | 0 | 1 | 0 |
| chr4_KI270896v1_alt | 8 | 4 | 8 | 4 |
| chr4_KI270925v1_alt | 2 | 0 | 2 | 0 |
| chr5 | 9,184 | 3,956 | 2,984 | 869 |
| chr5_GL339449v2_alt | 177 | 94 | 52 | 15 |
| chr5_GL383531v1_alt | 2 | 0 | 2 | 0 |
| chr5_GL383532v1_alt | 1 | 0 | 1 | 0 |
| chr5_GL949742v1_alt | 8 | 0 | 4 | 0 |
| chr5_KI270791v1_alt | 3 | 3 | 3 | 3 |
| chr5_KI270792v1_alt | 4 | 3 | 3 | 2 |
| chr5_KI270793v1_alt | 1 | 0 | 1 | 0 |
| chr5_KI270794v1_alt | 2 | 1 | 2 | 1 |
| chr5_KI270795v1_alt | 3 | 1 | 3 | 1 |
| chr5_KI270796v1_alt | 2 | 0 | 2 | 0 |
| chr5_KI270897v1_alt | 23 | 21 | 11 | 9 |
| chr5_KI270898v1_alt | 3 | 2 | 3 | 2 |
| chr6 | 8,445 | 4,142 | 2,967 | 1,043 |
| chr6_GL000250v2_alt | 622 | 298 | 187 | 80 |
| chr6_GL000251v2_alt | 1,312 | 602 | 353 | 162 |
| chr6_GL000252v2_alt | 1,254 | 553 | 329 | 151 |
| chr6_GL000253v2_alt | 1,076 | 517 | 309 | 132 |
| chr6_GL000254v2_alt | 1,229 | 553 | 307 | 152 |
| chr6_GL000255v2_alt | 1,280 | 590 | 337 | 153 |
| chr6_GL000256v2_alt | 1,145 | 508 | 315 | 134 |
| chr6_GL383533v1_alt | 4 | 0 | 4 | 0 |
| chr6_KI270758v1_alt | 3 | 3 | 2 | 2 |
| chr6_KI270797v1_alt | 5 | 5 | 2 | 2 |
| chr6_KI270798v1_alt | 6 | 5 | 3 | 2 |
| chr6_KI270800v1_alt | 1 | 0 | 1 | 0 |
| chr6_KI270801v1_alt | 7 | 7 | 2 | 2 |
| chr7 | 9,384 | 4,209 | 2,953 | 961 |
| chr7_GL383534v2_alt | 34 | 15 | 7 | 4 |
| chr7_KI270803v1_alt | 25 | 25 | 13 | 13 |
| chr7_KI270806v1_alt | 3 | 2 | 2 | 1 |
| chr7_KI270808v1_alt | 4 | 1 | 4 | 1 |
| chr7_KI270809v1_alt | 5 | 4 | 3 | 2 |
| chr8 | 7,713 | 3,466 | 2,449 | 669 |
| chr8_KI270810v1_alt | 1 | 0 | 1 | 0 |
| chr8_KI270811v1_alt | 1 | 0 | 1 | 0 |
| chr8_KI270813v1_alt | 18 | 16 | 12 | 10 |
| chr8_KI270814v1_alt | 2 | 0 | 2 | 0 |
| chr8_KI270815v1_alt | 2 | 2 | 2 | 2 |
| chr8_KI270816v1_alt | 29 | 26 | 17 | 14 |
| chr8_KI270817v1_alt | 4 | 4 | 3 | 3 |
| chr8_KI270819v1_alt | 4 | 3 | 3 | 2 |
| chr8_KI270821v1_alt | 7 | 5 | 5 | 3 |
| chr8_KI270822v1_alt | 9 | 8 | 4 | 3 |
| chr8_KI270900v1_alt | 2 | 2 | 1 | 1 |
| chr8_KI270926v1_alt | 1 | 1 | 1 | 1 |
| chr9 | 6,413 | 2,811 | 2,330 | 778 |
| chr9_GL383539v1_alt | 1 | 0 | 1 | 0 |
| chr9_GL383540v1_alt | 4 | 1 | 3 | 1 |
| chr9_GL383541v1_alt | 8 | 1 | 4 | 1 |
| chr9_GL383542v1_alt | 2 | 0 | 2 | 0 |
| chr9_KI270823v1_alt | 4 | 3 | 3 | 2 |
| chrM | 37 | 13 | 37 | 13 |
| chrUn_GL000195v1 | 3 | 2 | 3 | 2 |
| chrUn_GL000213v1 | 5 | 2 | 4 | 1 |
| chrUn_GL000216v2 | 3 | 0 | 3 | 0 |
| chrUn_GL000218v1 | 1 | 1 | 1 | 1 |
| chrUn_GL000219v1 | 7 | 1 | 7 | 1 |
| chrUn_GL000220v1 | 18 | 0 | 18 | 0 |
| chrUn_GL000224v1 | 7 | 0 | 7 | 0 |
| chrUn_KI270442v1 | 5 | 0 | 5 | 0 |
| chrUn_KI270741v1 | 6 | 0 | 6 | 0 |
| chrUn_KI270743v1 | 5 | 0 | 5 | 0 |
| chrUn_KI270744v1 | 2 | 0 | 2 | 0 |
| chrUn_KI270750v1 | 1 | 0 | 1 | 0 |
| chrUn_KI270752v1 | 4 | 0 | 4 | 0 |
| chrX | 5,928 | 2,834 | 2,450 | 813 |
| chrX_KI270880v1_alt | 3 | 1 | 3 | 1 |
| chrX_KI270881v1_alt | 1 | 1 | 1 | 1 |
| chrX_KI270913v1_alt | 2 | 1 | 2 | 1 |
| chrY | 834 | 225 | 615 | 125 |
Files
| Filename | Size | md5 |
|---|---|---|
| build.sh | 77.0 B | 2d836b4c8c5595dd1e1b4c5e7f52d178 |
| genomic_resource.yaml | 1.09 KB | a6c4861b386ed936499c4286be289dbe |
| hg38.ensGene.gtf.gz | 26.51 MB | 796ce881f78fc061bda76140c70b9ec6 |
| hg38.ensGene.gtf.gz.dvc | 103.0 B | 00d9257c824e3da10406bf84636a472c |
| hg38.ensGene.txt.gz | 9.56 MB | bc6cecf8bd0944c1f35e181587d46e2b |
| hg38.ensGene.txt.gz.dvc | 103.0 B | c958551c12aa4c10854a37b08ed579b3 |
| statistics/ |