Resource
| Id | hg19/gene_models/refGene_v20200110 |
|---|---|
| Type | gene_models |
| Version | 0 |
| Summary |
UCSC RefGene v20200110
|
| Description |
The UCSC RefGene track provides gene annotations for the human genome derived from NCBI RefSeq transcript sequences, aligned to the genome using UCSC's BLAT alignment tool. Unlike the NCBI RefSeq track, which uses NCBI's own mapping pipeline, the refGene track represents UCSC's independent alignment of RefSeq transcripts, offering a complementary view of the same underlying sequence data. Nassar et al, The UCSC Genome Browser database: 2025 update, Nucleic Acids Research 2025 Downloaded on: 05/21/2026 https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/genes/hg19.refGene.gtf.gz |
| Labels |
|
Configuration
Gene models file: hg19.refGene.txt.gz
Format: default
Statistics
Chromosome statistics
| Transcript number | Protein coding transcript number | Gene number | Protein coding gene number | |
|---|---|---|---|---|
| Global | 77,529 | 58,834 | 28,265 | 19,433 |
| chr1 | 7,299 | 5,504 | 2,827 | 2,017 |
| chr22 | 1,605 | 1,233 | 647 | 435 |
| chr16 | 2,915 | 2,204 | 1,147 | 826 |
| chr10 | 3,476 | 2,681 | 1,111 | 716 |
| chr21 | 889 | 633 | 384 | 233 |
| chr9 | 2,968 | 2,238 | 1,113 | 757 |
| chr8 | 2,864 | 2,162 | 1,030 | 659 |
| chr6 | 3,816 | 2,881 | 1,453 | 1,013 |
| chr6_apd_hap1 | 256 | 175 | 117 | 80 |
| chr6_cox_hap2 | 517 | 370 | 242 | 166 |
| chr6_dbb_hap3 | 474 | 340 | 220 | 151 |
| chr11 | 4,415 | 3,595 | 1,679 | 1,282 |
| chr3 | 4,450 | 3,478 | 1,566 | 1,045 |
| chr6_mcf_hap5 | 455 | 340 | 213 | 153 |
| chr14 | 2,301 | 1,676 | 946 | 595 |
| chr7 | 3,794 | 2,836 | 1,339 | 894 |
| chrX | 2,874 | 2,315 | 1,157 | 849 |
| chr17 | 3,749 | 2,925 | 1,572 | 1,147 |
| chr12 | 3,682 | 2,831 | 1,394 | 1,006 |
| chr4 | 2,785 | 2,175 | 1,088 | 739 |
| chr15 | 2,483 | 1,663 | 1,011 | 580 |
| chr18 | 1,202 | 924 | 434 | 267 |
| chr2 | 5,316 | 4,052 | 1,815 | 1,214 |
| chr20 | 1,855 | 1,401 | 775 | 528 |
| chr19 | 4,299 | 3,415 | 1,784 | 1,391 |
| chr5 | 3,358 | 2,520 | 1,313 | 858 |
| chr13 | 1,401 | 946 | 630 | 319 |
| chr6_mann_hap4 | 422 | 302 | 187 | 129 |
| chr6_qbl_hap6 | 497 | 356 | 227 | 155 |
| chr1_gl000191_random | 9 | 8 | 1 | 1 |
| chrY | 466 | 241 | 144 | 66 |
| chr6_ssto_hap7 | 435 | 312 | 199 | 136 |
| chr17_ctg5_hap1 | 63 | 44 | 22 | 13 |
| chr4_ctg9_hap1 | 14 | 13 | 6 | 6 |
| chr19_gl000209_random | 21 | 21 | 12 | 12 |
| chr7_gl000195_random | 9 | 8 | 5 | 5 |
| chrUn_gl000228 | 6 | 5 | 2 | 2 |
| chrUn_gl000220 | 43 | 0 | 27 | 0 |
| chrUn_gl000223 | 10 | 9 | 3 | 2 |
| chrUn_gl000213 | 4 | 1 | 4 | 1 |
| chr17_gl000205_random | 1 | 0 | 1 | 0 |
| chr1_gl000192_random | 1 | 0 | 1 | 0 |
| chrUn_gl000222 | 5 | 1 | 4 | 1 |
| chr4_gl000193_random | 1 | 0 | 1 | 0 |
| chr4_gl000194_random | 4 | 0 | 1 | 0 |
| chrUn_gl000211 | 1 | 0 | 1 | 0 |
| chrUn_gl000212 | 1 | 0 | 1 | 0 |
| chrUn_gl000215 | 5 | 0 | 3 | 0 |
| chrUn_gl000218 | 3 | 0 | 2 | 0 |
| chrUn_gl000219 | 4 | 0 | 4 | 0 |
| chrUn_gl000224 | 2 | 0 | 1 | 0 |
| chrUn_gl000227 | 1 | 0 | 1 | 0 |
| chrUn_gl000241 | 2 | 0 | 2 | 0 |
| chrM | 1 | 0 | 1 | 0 |
Files
| Filename | Size | md5 |
|---|---|---|
| build.sh | 78.0 B | ddb6ba57e592f7fd372d64d830a50ca0 |
| genomic_resource.yaml | 1.16 KB | 153dee2b30e67515bc1fe96c2c15bd7b |
| hg19.refGene.gtf.gz | 20.83 MB | 85ed7e02015581193a0c80cbfae0388b |
| hg19.refGene.gtf.gz.dvc | 103.0 B | 431e10ffb784a5ec067074e2f574b097 |
| hg19.refGene.txt.gz | 7.78 MB | b68c7702acbff1db7874f069bb2b5eec |
| hg19.refGene.txt.gz.dvc | 102.0 B | 57d4fd1caf5b076c2087bd0fb22162d5 |
| statistics/ |