Resource
| Id | hg19/gene_models/ncbiRefSeq_v20210517 |
|---|---|
| Type | gene_models |
| Version | 0 |
| Summary |
NCBI RefSeq v20210517
|
| Description |
The NCBI RefSeq gene model set provides transcript and gene annotations from the NCBI Reference Sequence database, made available through the UCSC Genome Browser as the ncbiRefSeq track. RefSeq annotations are curated to provide well-supported reference transcripts and genes, including protein-coding and noncoding models, and are widely used for variant interpretation, genome annotation, and biomedical analysis. Nassar et al, The UCSC Genome Browser database: 2025 update, Nucleic Acids Research 2025 Downloaded on: 05/20/2026 https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/genes/hg19.ncbiRefSeq.gtf.gz |
| Labels |
|
Configuration
Gene models file: hg19.ncbiRefSeq.txt.gz
Format: default
Statistics
Chromosome statistics
| Transcript number | Protein coding transcript number | Gene number | Protein coding gene number | |
|---|---|---|---|---|
| Global | 104,178 | 67,753 | 43,682 | 19,849 |
| chrMT | 37 | 13 | 37 | 13 |
| chr17_ctg5_hap1 | 97 | 58 | 29 | 13 |
| chr4_ctg9_hap1 | 18 | 9 | 13 | 5 |
| chr6_ssto_hap7 | 570 | 352 | 293 | 134 |
| chr6_qbl_hap6 | 646 | 422 | 311 | 153 |
| chr6_mcf_hap5 | 612 | 416 | 293 | 150 |
| chr6_mann_hap4 | 597 | 380 | 290 | 131 |
| chr6_dbb_hap3 | 633 | 410 | 310 | 150 |
| chr6_cox_hap2 | 699 | 443 | 351 | 164 |
| chr6_apd_hap1 | 349 | 207 | 180 | 81 |
| chrX_jh159150_fix | 278 | 219 | 133 | 86 |
| chrX_jh806600_fix | 142 | 78 | 80 | 24 |
| chrX_jh806599_fix | 13 | 6 | 10 | 4 |
| chrX_jh806598_fix | 13 | 7 | 13 | 7 |
| chrX_jh806597_fix | 65 | 43 | 41 | 21 |
| chrX_jh806596_fix | 16 | 8 | 13 | 5 |
| chrX_jh806603_fix | 4 | 0 | 4 | 0 |
| chrX_jh806602_fix | 12 | 4 | 9 | 3 |
| chrX_jh806601_fix | 38 | 14 | 29 | 6 |
| chrX_jh806588_fix | 6 | 0 | 6 | 0 |
| chrX_jh720455_fix | 3 | 3 | 2 | 2 |
| chrX_jh806595_fix | 22 | 11 | 16 | 7 |
| chrX_jh806594_fix | 11 | 9 | 9 | 7 |
| chrX_jh806593_fix | 39 | 22 | 20 | 11 |
| chrX_jh720454_fix | 17 | 11 | 13 | 8 |
| chrX_jh720453_fix | 21 | 3 | 14 | 2 |
| chrX_jh806592_fix | 38 | 25 | 19 | 10 |
| chrX_jh806591_fix | 41 | 28 | 10 | 2 |
| chrX_jh806587_fix | 158 | 96 | 84 | 36 |
| chrX_jh806590_fix | 199 | 135 | 110 | 61 |
| chrX_kb021648_fix | 25 | 19 | 13 | 8 |
| chrX_jh806589_fix | 6 | 0 | 6 | 0 |
| chrX_jh720452_fix | 15 | 9 | 10 | 4 |
| chrX_jh720451_fix | 10 | 3 | 10 | 3 |
| chrX_gl877877_fix | 1 | 0 | 1 | 0 |
| chr22_jh806586_fix | 24 | 22 | 2 | 1 |
| chr22_kb663609_alt | 10 | 5 | 7 | 4 |
| chr22_gl383582_alt | 13 | 6 | 8 | 4 |
| chr22_gl383583_alt | 1 | 1 | 1 | 1 |
| chr22_jh720449_fix | 12 | 7 | 8 | 4 |
| chr22_jh806585_fix | 1 | 0 | 1 | 0 |
| chr22_jh806584_fix | 2 | 0 | 2 | 0 |
| chr21_ke332506_fix | 29 | 21 | 24 | 18 |
| chr21_gl383581_alt | 11 | 9 | 5 | 4 |
| chr21_gl383580_alt | 8 | 5 | 3 | 2 |
| chr21_gl383579_alt | 3 | 0 | 3 | 0 |
| chr20_gl582979_fix | 7 | 3 | 6 | 2 |
| chr20_kb663608_fix | 2 | 0 | 2 | 0 |
| chr19_gl949753_alt | 114 | 93 | 36 | 29 |
| chr19_gl949752_alt | 157 | 124 | 50 | 39 |
| chr19_gl949751_alt | 78 | 63 | 27 | 23 |
| chr19_gl949750_alt | 75 | 63 | 23 | 21 |
| chr19_gl949749_alt | 75 | 62 | 24 | 22 |
| chr19_gl949748_alt | 75 | 64 | 23 | 22 |
| chr19_gl949747_alt | 108 | 92 | 34 | 30 |
| chr19_gl949746_alt | 143 | 109 | 49 | 36 |
| chr19_kb021647_fix | 170 | 131 | 58 | 42 |
| chr19_ke332505_fix | 65 | 47 | 29 | 17 |
| chr19_gl383574_alt | 28 | 21 | 3 | 2 |
| chr19_gl383576_alt | 7 | 1 | 7 | 1 |
| chr19_gl383575_alt | 18 | 12 | 8 | 2 |
| chr19_gl383573_alt | 20 | 7 | 15 | 3 |
| chr19_gl582977_fix | 22 | 5 | 21 | 4 |
| chr19_jh159149_fix | 10 | 9 | 6 | 5 |
| chr18_gl383572_alt | 1 | 1 | 1 | 1 |
| chr18_gl383571_alt | 1 | 1 | 1 | 1 |
| chr18_gl383570_alt | 1 | 0 | 1 | 0 |
| chr18_gl383567_alt | 4 | 2 | 3 | 1 |
| chr17_jh636061_fix | 11 | 6 | 6 | 3 |
| chr17_jh591186_fix | 45 | 9 | 5 | 3 |
| chr17_gl383566_alt | 2 | 0 | 2 | 0 |
| chr17_jh159144_fix | 55 | 45 | 14 | 6 |
| chr17_gl383558_fix | 21 | 16 | 11 | 7 |
| chr17_jh720447_fix | 20 | 8 | 9 | 3 |
| chr17_gl582976_fix | 54 | 46 | 21 | 19 |
| chr17_gl383564_alt | 10 | 7 | 10 | 7 |
| chr17_jh159147_alt | 7 | 6 | 6 | 5 |
| chr17_jh159148_alt | 9 | 6 | 8 | 5 |
| chr17_jh159146_alt | 28 | 24 | 24 | 21 |
| chr17_gl383559_fix | 7 | 6 | 6 | 5 |
| chr17_gl383560_fix | 38 | 27 | 20 | 13 |
| chr17_kb021646_fix | 31 | 20 | 13 | 9 |
| chr17_jh159145_fix | 24 | 20 | 14 | 10 |
| chr17_ke332502_fix | 2 | 0 | 2 | 0 |
| chr17_gl383561_fix | 7 | 2 | 7 | 2 |
| chr17_gl383562_fix | 3 | 2 | 3 | 2 |
| chr17_gl383563_alt | 9 | 5 | 4 | 2 |
| chr17_jh806582_fix | 11 | 6 | 6 | 3 |
| chr16_gl383557_alt | 4 | 3 | 3 | 2 |
| chr16_jh720446_fix | 14 | 10 | 5 | 2 |
| chr16_gl383556_alt | 6 | 6 | 2 | 2 |
| chr15_jh720445_fix | 9 | 6 | 4 | 3 |
| chr15_gl383555_alt | 15 | 9 | 2 | 1 |
| chr15_gl383554_alt | 15 | 6 | 12 | 4 |
| chr14_kb021645_fix | 224 | 188 | 204 | 176 |
| chr13_gl582975_fix | 4 | 3 | 2 | 1 |
| chr12_gl383548_fix | 3 | 1 | 3 | 1 |
| chr12_gl383551_alt | 1 | 0 | 1 | 0 |
| chr12_kb663607_fix | 13 | 11 | 7 | 5 |
| chr12_gl383553_alt | 6 | 4 | 4 | 2 |
| chr12_gl383552_alt | 2 | 0 | 2 | 0 |
| chr12_gl383550_alt | 9 | 4 | 6 | 1 |
| chr12_gl877876_alt | 30 | 21 | 27 | 19 |
| chr12_gl949745_alt | 26 | 19 | 23 | 17 |
| chr12_jh720444_fix | 76 | 53 | 27 | 17 |
| chr12_gl877875_alt | 6 | 2 | 5 | 1 |
| chr12_gl582974_fix | 6 | 2 | 5 | 1 |
| chr11_jh159138_fix | 36 | 23 | 9 | 7 |
| chr11_jh720443_fix | 42 | 28 | 17 | 10 |
| chr11_jh159140_fix | 21 | 15 | 5 | 2 |
| chr11_jh159142_fix | 65 | 53 | 17 | 10 |
| chr11_jh159139_fix | 6 | 3 | 6 | 3 |
| chr11_jh159141_fix | 16 | 7 | 12 | 5 |
| chr11_jh159143_fix | 10 | 10 | 5 | 5 |
| chr11_jh806581_fix | 7 | 3 | 4 | 1 |
| chr11_gl949744_fix | 6 | 2 | 5 | 2 |
| chr11_jh159137_alt | 10 | 3 | 10 | 3 |
| chr11_jh159136_alt | 15 | 9 | 15 | 9 |
| chr11_gl582973_fix | 13 | 3 | 13 | 3 |
| chr11_jh591185_fix | 18 | 14 | 5 | 3 |
| chr11_jh591184_fix | 6 | 5 | 3 | 2 |
| chr10_jh806580_fix | 4 | 2 | 2 | 1 |
| chr10_jh591182_fix | 11 | 9 | 5 | 4 |
| chr10_ke332501_fix | 4 | 2 | 2 | 1 |
| chr10_jh591183_fix | 23 | 16 | 4 | 2 |
| chr10_kb663606_fix | 35 | 13 | 10 | 4 |
| chr10_jh591181_fix | 193 | 142 | 60 | 21 |
| chr10_gl383546_alt | 12 | 9 | 6 | 3 |
| chr10_gl383545_alt | 6 | 1 | 6 | 1 |
| chr10_gl383543_fix | 19 | 16 | 8 | 5 |
| chr10_jh636060_fix | 16 | 12 | 10 | 6 |
| chr10_gl877873_fix | 14 | 1 | 6 | 1 |
| chr9_gl383538_fix | 5 | 4 | 2 | 1 |
| chr9_gl383537_fix | 4 | 3 | 2 | 2 |
| chr9_jh806578_fix | 1 | 0 | 1 | 0 |
| chr9_jh806577_fix | 1 | 0 | 1 | 0 |
| chr9_gl339450_fix | 48 | 34 | 21 | 14 |
| chr9_jh806579_fix | 8 | 6 | 5 | 3 |
| chr9_kb663605_fix | 1 | 0 | 1 | 0 |
| chr9_gl383542_alt | 1 | 0 | 1 | 0 |
| chr9_gl383541_alt | 5 | 2 | 3 | 1 |
| chr9_gl383540_alt | 1 | 1 | 1 | 1 |
| chr9_jh636059_fix | 12 | 9 | 4 | 3 |
| chr9_gl383539_alt | 1 | 0 | 1 | 0 |
| chr8_gl383536_fix | 36 | 28 | 20 | 14 |
| chr8_gl383535_fix | 60 | 45 | 26 | 16 |
| chr8_jh159135_fix | 13 | 9 | 6 | 4 |
| chr8_ke332500_fix | 36 | 30 | 1 | 1 |
| chr8_gl949743_fix | 4 | 1 | 3 | 1 |
| chr7_gl582971_fix | 124 | 99 | 116 | 94 |
| chr7_gl383534_alt | 12 | 9 | 6 | 4 |
| chr7_jh636058_fix | 45 | 20 | 19 | 7 |
| chr7_gl582968_fix | 21 | 17 | 9 | 5 |
| chr7_gl582972_fix | 9 | 6 | 5 | 2 |
| chr7_jh159134_fix | 250 | 175 | 99 | 54 |
| chr7_ke332499_fix | 11 | 0 | 9 | 0 |
| chr7_gl582969_fix | 6 | 1 | 6 | 1 |
| chr7_gl582970_fix | 15 | 2 | 14 | 1 |
| chr6_ke332498_fix | 3 | 1 | 3 | 1 |
| chr6_jh636056_fix | 13 | 9 | 6 | 4 |
| chr6_kb663604_fix | 21 | 11 | 10 | 4 |
| chr6_gl383533_alt | 2 | 0 | 2 | 0 |
| chr6_jh636057_fix | 13 | 6 | 9 | 2 |
| chr6_jh806576_fix | 16 | 5 | 13 | 2 |
| chr5_gl383531_alt | 1 | 0 | 1 | 0 |
| chr5_ke332497_fix | 63 | 52 | 43 | 32 |
| chr5_jh159133_fix | 23 | 22 | 3 | 3 |
| chr5_gl339449_alt | 96 | 55 | 46 | 15 |
| chr5_gl949742_alt | 3 | 0 | 3 | 0 |
| chr4_gl877872_fix | 28 | 6 | 23 | 3 |
| chr4_gl383527_alt | 3 | 3 | 3 | 3 |
| chr4_gl582967_fix | 2 | 2 | 1 | 1 |
| chr4_gl383529_alt | 37 | 37 | 1 | 1 |
| chr4_ke332496_fix | 50 | 24 | 15 | 6 |
| chr3_gl383526_alt | 3 | 1 | 2 | 1 |
| chr3_gl383525_fix | 6 | 5 | 1 | 1 |
| chr3_jh159131_fix | 5 | 0 | 4 | 0 |
| chr3_gl383524_fix | 1 | 1 | 1 | 1 |
| chr3_ke332495_fix | 17 | 15 | 4 | 3 |
| chr3_gl383523_fix | 20 | 15 | 5 | 4 |
| chr3_jh159132_fix | 40 | 36 | 12 | 10 |
| chr3_jh636055_alt | 21 | 5 | 7 | 1 |
| chr2_gl877870_fix | 7 | 0 | 4 | 0 |
| chr2_gl383522_alt | 8 | 8 | 4 | 4 |
| chr2_gl582966_alt | 2 | 1 | 1 | 1 |
| chr2_gl877871_fix | 18 | 3 | 17 | 2 |
| chr2_kb663603_fix | 30 | 20 | 18 | 9 |
| chr2_gl383521_alt | 3 | 1 | 3 | 1 |
| chr1_gl383517_fix | 1 | 0 | 1 | 0 |
| chr1_gl383516_fix | 3 | 2 | 2 | 1 |
| chr1_jh806575_fix | 1 | 0 | 1 | 0 |
| chr1_jh636054_fix | 41 | 36 | 14 | 10 |
| chr1_jh806573_fix | 1 | 0 | 1 | 0 |
| chr1_gl383520_alt | 11 | 9 | 3 | 2 |
| chr1_gl383519_alt | 22 | 19 | 9 | 7 |
| chr1_gl383518_alt | 8 | 5 | 5 | 3 |
| chr1_jh636052_fix | 485 | 268 | 214 | 74 |
| chr1_jh636053_fix | 47 | 10 | 29 | 7 |
| chr1_gl949741_fix | 9 | 5 | 5 | 1 |
| chr1_jh806574_fix | 1 | 0 | 1 | 0 |
| chrUn_gl000241 | 1 | 0 | 1 | 0 |
| chrUn_gl000236 | 1 | 0 | 1 | 0 |
| chrUn_gl000235 | 1 | 0 | 1 | 0 |
| chrUn_gl000231 | 3 | 0 | 3 | 0 |
| chrUn_gl000230 | 1 | 0 | 1 | 0 |
| chrUn_gl000229 | 1 | 0 | 1 | 0 |
| chrUn_gl000228 | 8 | 3 | 5 | 1 |
| chrUn_gl000224 | 1 | 0 | 1 | 0 |
| chrUn_gl000220 | 12 | 0 | 12 | 0 |
| chrUn_gl000219 | 1 | 0 | 1 | 0 |
| chrUn_gl000218 | 3 | 0 | 2 | 0 |
| chrUn_gl000215 | 1 | 0 | 1 | 0 |
| chrUn_gl000213 | 5 | 1 | 3 | 1 |
| chrUn_gl000212 | 5 | 0 | 5 | 0 |
| chrUn_gl000211 | 4 | 0 | 4 | 0 |
| chrY | 724 | 185 | 518 | 64 |
| chrX | 3,531 | 2,165 | 1,976 | 834 |
| chr22 | 1,983 | 1,352 | 968 | 505 |
| chr21 | 1,087 | 662 | 541 | 218 |
| chr20 | 2,292 | 1,526 | 1,059 | 527 |
| chr19 | 5,140 | 3,828 | 2,242 | 1,391 |
| chr18 | 1,613 | 1,045 | 715 | 263 |
| chr17_gl000205_random | 2 | 0 | 2 | 0 |
| chr17 | 4,481 | 3,113 | 2,084 | 1,137 |
| chr16 | 3,471 | 2,389 | 1,561 | 817 |
| chr15 | 3,044 | 1,805 | 1,460 | 575 |
| chr14 | 3,244 | 2,072 | 1,714 | 826 |
| chr13 | 2,009 | 1,057 | 1,083 | 320 |
| chr12 | 4,781 | 3,208 | 2,041 | 1,003 |
| chr11 | 5,606 | 3,855 | 2,458 | 1,267 |
| chr10 | 4,224 | 2,807 | 1,671 | 712 |
| chr9 | 3,780 | 2,428 | 1,737 | 765 |
| chr8 | 3,620 | 2,278 | 1,657 | 658 |
| chr7_gl000195_random | 6 | 4 | 2 | 1 |
| chr7 | 4,874 | 3,087 | 2,200 | 970 |
| chr6 | 5,022 | 3,056 | 2,424 | 1,010 |
| chr5 | 4,288 | 2,678 | 2,059 | 855 |
| chr4_gl000194_random | 6 | 0 | 3 | 0 |
| chr4_gl000193_random | 2 | 0 | 2 | 0 |
| chr4 | 3,732 | 2,345 | 1,840 | 738 |
| chr3 | 5,882 | 4,001 | 2,407 | 1,044 |
| chr2 | 6,644 | 4,291 | 2,973 | 1,290 |
| chr1_gl000192_random | 3 | 0 | 3 | 0 |
| chr1 | 8,907 | 5,854 | 4,104 | 1,992 |
Files
| Filename | Size | md5 |
|---|---|---|
| build.sh | 83.0 B | 34d095165cf6acd6aeb4c5f13dce5afe |
| genomic_resource.yaml | 1.2 KB | 81ca08d4d68a70a1fd07996b896ceffe |
| hg19.ncbiRefSeq.gtf.gz | 18.81 MB | ccd53cf898616135c47c793c975cef39 |
| hg19.ncbiRefSeq.gtf.gz.dvc | 106.0 B | 966f0a696c6e452ac66367abd2220fde |
| hg19.ncbiRefSeq.txt.gz | 5.23 MB | c28680e5e2310c98f424d58a1a3625a0 |
| hg19.ncbiRefSeq.txt.gz.dvc | 105.0 B | 297ac74cb6041b572e7ab78f2ca13150 |
| statistics/ |