Resource
| Id | hg19/gene_models/knownGene_v20240425 |
|---|---|
| Type | gene_models |
| Version | 0 |
| Summary |
UCSC Known Genes v20240425
|
| Description |
The UCSC Known Genes track provides a comprehensive set of gene annotations for the human genome, constructed through a fully automated process integrating protein data from Swiss-Prot/TrEMBL (UniProt) and associated mRNA data from GenBank, with extensive cross-references to genomic and proteomic data resources. It offers broad coverage of protein-coding genes with extensive cross-references to genomic and proteomic data resources, serving as a foundation for the Genome Browser, Gene Sorter, and Table Browser at the UCSC website. Hsu et al, The UCSC Known Genes, Bioinformatics 2006 Nassar et al, The UCSC Genome Browser database: 2025 update, Nucleic Acids Research 2025 Downloaded on: 05/20/2026 https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/genes/hg19.knownGene.gtf.gz |
| Labels |
|
Configuration
Gene models file: hg19.knownGene.txt.gz
Format: default
Statistics
Chromosome statistics
| Transcript number | Protein coding transcript number | Gene number | Protein coding gene number | |
|---|---|---|---|---|
| Global | 254,535 | 111,242 | 223,289 | 80,065 |
| chr1 | 22,626 | 9,892 | 19,567 | 6,839 |
| chr10 | 9,237 | 4,000 | 8,033 | 2,801 |
| chr11 | 14,909 | 7,305 | 12,832 | 5,236 |
| chr12 | 13,796 | 6,452 | 12,108 | 4,767 |
| chr13 | 4,703 | 1,514 | 4,260 | 1,073 |
| chr14 | 9,281 | 4,228 | 8,193 | 3,143 |
| chr15 | 9,201 | 3,693 | 8,267 | 2,762 |
| chr16 | 11,824 | 5,479 | 10,528 | 4,188 |
| chr17 | 14,708 | 7,296 | 12,884 | 5,476 |
| chr18 | 4,752 | 1,826 | 4,249 | 1,324 |
| chr19 | 14,455 | 7,749 | 12,576 | 5,874 |
| chr2 | 18,913 | 7,549 | 16,819 | 5,457 |
| chr20 | 6,024 | 2,573 | 5,236 | 1,785 |
| chr21 | 3,167 | 1,057 | 2,788 | 679 |
| chr22 | 5,350 | 2,387 | 4,731 | 1,768 |
| chr3 | 16,073 | 6,983 | 13,962 | 4,872 |
| chr4 | 10,484 | 4,343 | 9,228 | 3,088 |
| chr5 | 12,121 | 4,745 | 10,808 | 3,435 |
| chr6 | 12,038 | 5,052 | 10,524 | 3,540 |
| chr7 | 12,247 | 5,076 | 10,776 | 3,607 |
| chr8 | 10,356 | 4,119 | 9,210 | 2,978 |
| chr9 | 8,922 | 3,712 | 7,817 | 2,610 |
| chrM | 37 | 13 | 37 | 13 |
| chrMT | 37 | 13 | 37 | 13 |
| chrX | 8,243 | 3,970 | 6,869 | 2,602 |
| chrY | 1,031 | 216 | 976 | 161 |
Files
| Filename | Size | md5 |
|---|---|---|
| build.sh | 81.0 B | 55ae3b162e919ab31ddc5126b35d2960 |
| genomic_resource.yaml | 1.26 KB | 4da79dac35e3c3a06207b7d9e82daed3 |
| hg19.knownGene.gtf.gz | 35.02 MB | 09c62ed521f1e0329f4135a147b12793 |
| hg19.knownGene.gtf.gz.dvc | 105.0 B | 1a6126eeb6968e2e19adca3f2a154070 |
| hg19.knownGene.txt.gz | 12.18 MB | 448d09566e9ef89d78237aa60ed6f911 |
| hg19.knownGene.txt.gz.dvc | 105.0 B | a08be2ca8d634254e97da5c4633dc003 |
| statistics/ |